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Homo sapiens
Homo sapiens
Cell lines
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B cell lymphoma (mix of SUDHL-4, SUDHL-6, RCK8) ref: [BCLY]
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Bone marrow endothelial cells (HBMEC) ref: [HBMEC]
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Breast tumor epithelial cells (mix of T47D, MDA-MB-468, MCF7, BT20) ref: [HBEC]
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Brown adipocytes (differentiated PAZ6) ref: [PZD]
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Colon tumor epithelial cells (mix of Caco2, HCA7, Colo205, SW480) ref: [HCCA]
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Colorectal carcinoma cells (HCT116) ref: [HCT116TO]
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Ewing's sarcoma cells ref: [HSEG]
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HeLa cells ref: [HeLa]
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Lung tumor cells (mix of A549, H1703, H460) ref: [HLUC]
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Podocytes ref: [HPO]
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Pre-adipocytes (undifferentiated PAZ6) ref: [PZU]
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Prostate tumor cells (mix of PC3, DU145, PNT1A, LNCaP) ref: [HPRC]
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T-cells (CEMC7) ref: [CEMC7]
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Umbilical vein endothelial Cells ref: [HUVEC]
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Umbilical vein endothelial Cells, stressed & unstressed (HUVEC) ref: [HSCUV]
Primary Cells
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Fibroblasts ref: [HF]
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Hepatocytes ref: [PHH]
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Leukocytes + activated mononuclear cells ref: [HLMA]
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Macrophages (mix of Pam3CSK4 induced and IFNß induced) ref: [HMIN]
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Macrophages (non induced) ref: [MAC]
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Melanocytes ref: [HML]
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Thymocytes (mix of CD4+ and CD8+) ref: [HTH]
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Bone marrow-derived hematopoietic stem cells ref: [BMHSC]
Tissues
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Brain adult ref: [HBR]
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Brain fetal (entorhinal cortex and hippocampus) ref: [HFHIT]
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Brain fetal ref: [HFBR]
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Breast ref: [HBT]
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Colon ref: [HCN]
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Heart adult/fetal ref: [HVEH]
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Langerhans islets ref: [HISL]
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Liver ref: [HLV]
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Lung ref: [HNL]
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Muscle skeletal adult/fetal ref: [HMAF]
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Pancreas ref: [HPS]
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Placenta ref: [PLA]
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Reconstituted skin (Episkin) ref: [EpiSkin]
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Retina ref: [HRET]
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Testis ref: [HTestis]
Plants
Arabidopsis thaliana
Tissues
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Flower ref: [ATFO]
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Meiotic bud ref: [ATMB]
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Mixed leaves, TYMV infected, flg22 infiltrated ref: [AIFT]
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Organ boundary cells of inflorescence ref: [ATOBC]
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Rosette leaf, P. syringae infected ref: [AIPS]
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Seedling (one-week old) ref: [ATH]
Barley (Hordeum vulgare)
Tissues
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7-day old seedling leaf, Blumeria graminis f. sp. Hordei infected ref: [HVMI]
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Seedling leaves ref: [HVSLT]
Brachypodium distachyon
Tissues
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Root and shoot ref: [BMDN]
Corn (Zea mays)
Tissues
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Endosperm ref: [ZMEN]
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Immature ear and tassel inflorescence primordia, vegetative apices ref: [MAET]
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Kernel ref: [ZEMAK]
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Leaf and ovary ref: [MALO]
Grape (Vitis riparia)
Kalanchoe laxiflora
Marchantia polymorpha
Tissues
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Mixed tissues ref: [MAPA]
Medicago truncatula
Tissues
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Root ref: [METRO]
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Root, A. euteiches infected ref: [MOTA]
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Whole plant and root, A. euteiches infected ref: [MTA17]
Melon (Cucumis melo)
Morning glory (Ipomoea nil)
Nicotiana benthamiana
Orange (Citrus sinensis)
Tissues
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Plant, Las infected ref: [CSIL]
Pea (Pisum sativum)
Tissues
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Leaf and stem, ref. [PSLS]
Physcomitrella patens
Tissues
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Protonema and gametophores ref: [PHPA]
Poplar (Populus tremula )
Tissues
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L. x Populus tremuloides (Leaves and Buds) ref: [ASLB]
Rapeseed (Brassica napus)
Tissues
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Leaf, Leptosphaeria maculans infected ref: [BNLI]
Rice (Oryza sativa)
Setaria viridis
Soybean (Glycine max)
Tissues
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Leaf and root, water stressed ref: [GMLR]
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Leaf, shoot, root, B. japonicum inoculated ref: [SSRL]
Tobacco (Nicotiana tabacum)
Tomato (Solanum lycopersicum)
Tissues
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Fruit ref: [TOFT]
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Leaf, petiole, stem and root, TYLCV infected ref: [TOPLI]
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Leaf, stem and petiole ref: [TOLE]
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Meristem, leaf primordia and stem, floral bud ref: [TOM]
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Ovary ref: [TOV]
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Root, R. solanacaerarum and M. incognita infected ref: [TORI]
Wheat (Triticum aestivum)
Tissues
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Head, leaf and root ref: [WHLR]
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Leaf, Zymoseptoria tritici inoculated ref: [WLIZT]
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Leaves, infected with powdery mildew and wheat leaf rust ref: [TALSI]
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Triticum turgidum (Leaf, peduncle and grain) ref: [TTLPG]
Rodents
Mouse (Mus musculus)
Tissues
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Brain adult ref: [AMB]
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Brain embryo (mix of E10.5 and E12.5) ref: [MBE]
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Brain embryo (mix of E14, E16 and E18) ref: [MB6E]
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Mus musculus whole cochlea ref: [MCOC]
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Embryonic stem cells (treated with CHIR and bFGF) ref: [MSCT]
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Embryonic stem cells ref: [MESC]
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Inner Ear E16.5 ref: [MOINE]
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Inner Ear ref: [MIE]
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Kidney adult ref: [MKI]
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Kidney embryo ref: [MOKE]
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Neurosphere adult ref: [MANE]
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Ovary ref: [MMO]
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Pancreatic beta-cells ref: [MPC]
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Spleen ref: [MSPL]
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Testis ref: [MUST]
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Corti Organ ref: [MMCO]
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Mouse Postnatal day 7 lungs ref: [MMPLG]
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Mus musculus whole cochlea ref: [MCOC]
Rat (Rattus norvegicus)
Tissues
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Hippocampus ref: [RHC]
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Rear brain ref: [RBP]
Insects
Drosophila melanogaster
Tissues
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Adult head ref: [DMT]
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Embryo (0-12h and 12-24h) ref: [DME]
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Larvae brain ref: [DMLB]
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Ovary ref: [DMOV]
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Testis ref: [DMTES]
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Third instar larvae ref: [DLTS]
Tiger mosquito (Aedes albopictus)
Green peach aphid
Cells
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Myzus persicae ref: [MYPE]
Nasonia vitripennis